Speaker: Ansgar Gruber from University of South Bohemia in České Budějovice and Biology Centre of the CASPlastids of diatoms and related algae with complex plastids of red algal origin, are surrounded by four membranes, which also define the periplastidic compartment (PPC), the space between the second and third membranes. Metabolic reactions as well as cell biological processes take place in the PPC; however, genome wide predictions of the proteins targeted to this compartment were so far based on manual annotation work. Using published experimental protein localizations as reference data, we developed the first automatic prediction method for PPC proteins, which we included as a new feature in an updated version of the plastid protein predictor ASAFind. The new ASAFind version also accepts the output of the most recent versions of SignalP (5.0) and TargetP (2.0) as input data. Furthermore, we release a script to calculate custom scoring matrices, that can be used for predictions in a simplified score cut-off mode. This allows for adjustments of the method to other groups of algae.Registration is not needed.Join the webinar in GoToMeeting»We value your opinion. Please give us your feedback on the webinar»Note: the webinar will be recorded and the recording will be used on the ELIXIR CZ website, social media, in ELIXIR CZ e-publications, or in any other ELIXIR CZ online materials.
We are sorry to inform you that due to ELIXIR CZ Annual Conference 2021 we need to skip a usual service introduction on Friday, 26 November. Join us for the conference, registration is open until 11 November, or have a look on our video library on YouTube
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projít na článekAfter the summer break, the series of webinars introducing our services is back. Learn about tools and databases developed by ELIXIR CZ, which have great potential to help you in your daily research work. Every Friday at 9:30am, you can have a closer look
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