Metadynminer and MetadynreporterVojtěch Spiwok from UCTBiomolecular simulations are computationally expensive calculations. For this reason most simulations nowadays span nanosecond or microsecond time scales. Many interesting processes, such as protein-ligand binding or protein-folding take place in much longer time scales. Metadynamics is one of most popular method developed to accelerate molecular simulations. We have developed an R package Metadynminer for analysis and visualization of the results of metadynamics in popular R statistical package. Furthermore, we provide a Metadynreporter web service via a Galaxy portal.Meet us online every friday morning to explore the portfolio of ELIXIR CZ tools and services at https://global.gotomeeting.com/join/508817845 .Registration is not neededFuture webinars30. 4. at 9:30 SPCI: Structural and physicochemical interpretation of QSAR models. 7. 5. at 9:30 FireProt: Computational tool for the design of stable proteins.14. 5. at 9:30 2DProts: Family-wide 2D diagrams of protein secondary structure.21. 5. at 9:30 Traveler: visualization of secondary structure of RNA molecules.Take a look at the webinar and give us your feedback.Please note that online session will be recorded and may be used on ELIXIR CZ website, social media, in ELIXIR CZ e-publications and any other ELIXIR CZ online materials.
ELIXIR and Galaxy ProjectMartin Čech from IOCBGalaxy is a tool that assists scientists with making their software pipelines reproducible, portable, and easy to share. This session presents a 10,000 feet overview of the Galaxy Project what it is, what it
projít na článekNucleic Acid Conformations (dnatco.datmos.org)Jiří Černý from BTUA detailed description of the dnatco.datmos.org web server implementing the universal structural alphabet of nucleic acids will be presented. The web server performs an assignment of the nuc
projít na článekMol* visualization of biomacromoleculesDavid Sehnal from MU The Mol* Viewer (https://molstar.org/) enables 3D visualisation of macromolecular coordinate and experimental data, together with capabilities for displaying structure quality, functional, or bio
projít na článekAmtDB database of ancient human full mitogenomes and sample metadataEdvard Ehler from IMGOur AmtDB (https://amtdb.org/) represents today the most complete open online source of aDNA samples (mitogenomes) and additional information about the samples, thei
projít na článekWe are sorry to inform you that due to ELIXIR CZ Annual Conference 2021 we need to skip a usual service introduction on Friday, 26 November. Join us for the conference, registration is open until 11 November, or have a look on our video library on YouTube
projít na článek