FireProt: Computational tool for the design of stable proteinsMiloš Musil from ICRC FireProt is a family of tools for the design and analysis of stable proteins. FireProt-web is a server for the fully automated design of stable multiple-point mutants, while FireProt-ASR helps inexperienced users with the successful utilization of ancestral sequence reconstruction. Finally, FireProt-DB is a novel database designated for the storage and maintenance of protein stability data.Meet us online every friday morning to explore the portfolio of ELIXIR CZ tools and services at https://global.gotomeeting.com/join/508817845 . Registration is not needed.Future webinars14. 5. at 9:30 2DProts: Family-wide 2D diagrams of protein secondary structure.21. 5. at 9:30 Traveler: visualization of secondary structure of RNA molecules.28. 5. at 9:30 cpPredictor: template based prediction of RNA secondary structures. 4. 6. at 9:30 EnzymeMiner & SoluProt: mining of soluble enzymes. Take a look at the webinar and give us your feedback.Please note that online session will be recorded and may be used on ELIXIR CZ website, social media, in ELIXIR CZ e-publications and any other ELIXIR CZ online materials.
ELIXIR and Galaxy ProjectMartin Čech from IOCBGalaxy is a tool that assists scientists with making their software pipelines reproducible, portable, and easy to share. This session presents a 10,000 feet overview of the Galaxy Project what it is, what it
projít na článekSPCI: Structural and physicochemical interpretation of QSAR modelsPavel Polishchuk from UPOL The SPCI tool enables automatic building of quantitative structure-activity relationship (QSAR) models and their interpretation. Interpretation is performed in te
projít na článekAmtDB database of ancient human full mitogenomes and sample metadataEdvard Ehler from IMGOur AmtDB (https://amtdb.org/) represents today the most complete open online source of aDNA samples (mitogenomes) and additional information about the samples, thei
projít na článekPrankWebMarian Novotný from UKPrankWeb (https://prankweb.cz/) is a tool predicting ligand binding sites on 3D structures using machine learning algorithms. The tool is integrated into the PDBe-KB. We will present both its current state and its future deve
projít na článekMetadynminer and MetadynreporterVojtěch Spiwok from UCTBiomolecular simulations are computationally expensive calculations. For this reason most simulations nowadays span nanosecond or microsecond time scales. Many interesting processes, such as protein-l
projít na článek