This workshop is open to everybody interested in Galaxy and consists of two main parts:The first part of the workshop (starting at 14:00) will be hands-on and introduce attendees to some advanced Galaxy’s capabilities. Namely we will walk through the best practices of processing hundreds of datasets simultaneously using Dataset Collections, you will learn how to use the Rule Based Uploader to create and handle collections dynamically e.g. from a list of remote files and if there is time we will cover inherited name tags, that enable you to better organize large scale analyses in your Galaxy History.In the second part (starting at 15:00), a guest speaker, Petr Novák from Biology Centre CAS, will present his findings on the use of Galaxy in the field of repetitive sequences and genome annotation. Dr Novák is one of the key figures behind the successful RepeatExplorer Galaxy and will demonstrate how to use the tools available on the RepeatExplorer server to annotate genome assemblies. He will introduce the annotation tool DANTE and explain how to create a custom library of repeats from the RepeatExplorer2 output and how to use this library for annotating genome assemblies.RegistrationRegistration is closed. Due to hands-on concept we have to limit number of participants to 50.OrganizersJiří VondrášekELIXIR CZ, Institute of Organic Chemistry and Biochemistry of the CASMartin ČechELIXIR CZ, Institute of Organic Chemistry and Biochemistry of the CAS
Speaker: Petr Novák from Biology Centre of the Czech Academy of SciencesRepeatExplorer Galaxy Server provides several tools for discovering and annotation of repetitive elements. Most notably, these include tools such as RepeatExplorer2 or TAREAN pipeline
projít na článekThis workshop is open to everybody interested in Galaxy and has two independent parts. Please feel free to join any or both.The first part of the workshop (starting at 13:00) is a variation of an intro to Galaxy. It will introduce attendees to Galaxy’s ec
projít na článekThis workshop is open to everybody interested in Galaxy and consists of two main parts:The first part of the workshop (ca 90 min) will introduce attendees to Galaxy’s ecosystem and capabilities. We will walk through the interface and have hands-on experie
projít na článekA course is being organized in Prague, hosted by the Czech ELIXIR Node lead institute in cooperation with the nodes involved in ELIXIR-EXCELERATE task 10.3 “Capacity Building in Genome Assembly and Annotation”. Some of the most experienced assembly and an
projít na článekThe University of the South Bohemia (ELIXIR CZ) would like to invite you to the online hands-on workshop focused on UniCatDB.UnicatDB is the service platform developed under the ELIXIR research infrastructure for more than two years representing robust un
projít na článek